Glyma13g23090 - SoyBase

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Report for Sequence Feature Glyma13g23090

Feature Type:	gene_model
Chromosome:	Gm13
Start:	26551905
stop:	26556420
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g23090

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G34850	AT	Annotation by Michelle Graham. TAIR10: purple acid phosphatase 26 \| chr5:13108475-13111217 REVERSE LENGTH=475	SoyBase	E_val: 0	ISS
GO:0006970	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to osmotic stress	SoyBase	N/A	ISS
GO:0046686	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cadmium ion	SoyBase	N/A	ISS
GO:0055062	GO-bp	Annotation by Michelle Graham. GO Biological Process: phosphate ion homeostasis	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0005773	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuole	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0009505	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plant-type cell wall	SoyBase	N/A	ISS
GO:0003993	GO-mf	Annotation by Michelle Graham. GO Molecular Function: acid phosphatase activity	SoyBase	N/A	ISS
GO:0004722	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine phosphatase activity	SoyBase	N/A	ISS
GO:0016787	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity	SoyBase	N/A	ISS
GO:0046872	GO-mf	Annotation by Michelle Graham. GO Molecular Function: metal ion binding	SoyBase	N/A	ISS
KOG1378	KOG	Purple acid phosphatase	JGI		ISS
PTHR22953	Panther	ACID PHOSPHATASE RELATED	JGI		ISS
PF00149	PFAM	Calcineurin-like phosphoesterase	JGI		ISS
UniRef100_I1LZT0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1LZT0_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q8L5E1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Acid phosphatase n=1 Tax=Lupinus luteus RepID=Q8L5E1_LUPLU	SoyBase	E_val: 0	ISS

Proteins Associated with Glyma13g23090

Locus	Gene Symbol	Protein Name
	PAP25	Purple acid phosphatase 25 gene
	PAP25	Purple acid phosphatase gene 25

Expression Patterns of Glyma13g23090

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g23090

Paralog	Evidence	Comments
Glyma17g11790	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g23090 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g161900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g23090

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma13g23090

Limit To All Plant Sequences

>Glyma13g23090.2   sequence type=transcript   gene model=Glyma13g23090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AATCATTGCACCATTCGCTTTATAAATCAATCAATTGGCTTCTTCTTTTTTCTCATCACTCGGGTGGCGTGCTTTGGCTTCCCTTCCCCCTCTTCTTAGCAAATGTTTCAATATTCCAAGGCCATGTTGCTTAATTTAGTTCTTGTTTCCTTTGTCCTCTTGAGTTCTATCAGAGATGGGAGTGCAGGGATCACCAGCTCTTTCGTTCGGCCACAGTGGCCAGGAGTTGACATTCCCGTGGATCATGAAGTATTTGCAGTTCCAAAGGGTTATAATGCACCTCAACAAGTGCACATCACGCAAGGTGACTATGATGGAAAAGCAGTAATAGTCTCATGGGTGACCCCAGATGAACCAGGGACTCGCCATGTGCAATATGGCACATCAAAGGATAAGTTTAAAACTAGTGCAGAAGGCACAGTTGCAAACTACACTTTCTATAACTACAAGTCTGGCTACATTCATCATTGTCTTATTGAAGGCCTTGAGTATAAGACAAAATACTACTATAGAATTGGAAGTGGTGATTCTGCTCGAGACTTTTGGTTCGAAACACCTCCTAAAGTTGGGCCAGATACTCCCTACAAATTTGGGATCATTGGTGATTTGGGGCAAACGTTTAATTCTCTTTCGACCCTTGAGCATTATTTGGAGAGTGGAGGAGAGGCTGTGTTATATGTTGGAGATCTTTCTTATTCTGATGAACATGACTACAAAGATATGGGTTTACGGTGGGATACATGGGGCCGATTTGCTGAAAGGAGTGCAGCATATCAGCCATGGATGTGGAATGTGGGAAACCACGAAGTAGAGTTTTTGCCTGAAGTGGGAGAAGTTGAACCTTTCAAAAACTATCTTTACCGATATACTACTCCCTATTCGGCTTCCAAAAGCACCAGCCCCCTCTGGTATGCAGTCAGGCGTGCCTCTGCTCATATCATTGTGCTATCAAGCTATTCTCCATTTGTGAAGTACACGCCTCAATACATATGGCTTAAAGAAGAGCTGGCGCGGGTTGATAGAAAGAAGACACCTTGGCTCATTGTGCTCGTGCACAAGCCACTCTACAGCAGCAACGTAGCTCACTACATGGAGGGTGAAGCCATGCGATCAGTTTTTGAGACATGGTTCGTCCAATACAAAGTTGATGTCATCTTTGCCGGCCATGTCCATGCTTATGAAAGATCATATCGATACTCCAATATAGACTACAACATAACTGGCGGTAGAAGGTATCCCATACCTGACAAATCAGCACCTATTTACATAACAATCGGAGATGGAGGAAATCTAGAAGGTCTTGCCTCAAGTTATTTGGATCCACAGCCAGAATATTCTGCATTCAGAGAAGCGAGCTATGGACACGCCACACTGGAGATAAAAAACAGGACCCATGCTATCTACCACTGGTATCGCAATGATGACGGAAAGAAAGTCCCAGCTGACTCTCTCGTATTGCATAACCAGTATTGGTAGGTTCTTCATTCCACCTTTTCTTTGGCAGTGGCAAGGAAAAATATGAATGTCATTATCTCGTTGTTACGATGAATCATGAATTATAAGACCGACAGAAAGTAAGATGTCACGAATGATGTCATCGACATATTCTCCGCTACATGCATTTCCTCATCAATTTTGGTTGTGTTATATTTTCTTCTTTGTATCATGTTGGGAACCTCCGTAAGTTAATTAATCTCTCTCGTGGAGACTCAGAACTGCTATACATTATATCATAAACCGCCGGAAATTTCTTGCATGAAAAATAAAAGGAAGCCATACTTGATACTCCATTACTACTATATATATATATATATATATATATATG

Coding sequences of Glyma13g23090

Limit To All Plant Sequences

>Glyma13g23090.1   sequence type=CDS   gene model=Glyma13g23090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTTCAATATTCCAAGGCCATGTTGCTTAATTTAGTTCTTGTTTCCTTTGTCCTCTTGAGTTCTATCAGAGATGGGAGTGCAGGGATCACCAGCTCTTTCGTTCGGCCACAGTGGCCAGGAGTTGACATTCCCGTGGATCATGAAGTATTTGCAGTTCCAAAGGGTTATAATGCACCTCAACAAGTGCACATCACGCAAGGTGACTATGATGGAAAAGCAGTAATAGTCTCATGGGTGACCCCAGATGAACCAGGGACTCGCCATGTGCAATATGGCACATCAAAGGATAAGTTTAAAACTAGTGCAGAAGGCACAGTTGCAAACTACACTTTCTATAACTACAAGTCTGGCTACATTCATCATTGTCTTATTGAAGGCCTTGAGTATAAGACAAAATACTACTATAGAATTGGAAGTGGTGATTCTGCTCGAGACTTTTGGTTCGAAACACCTCCTAAAGTTGGGCCAGATACTCCCTACAAATTTGGGATCATTGGTGATTTGGGGCAAACGTTTAATTCTCTTTCGACCCTTGAGCATTATTTGGAGAGTGGAGGAGAGGCTGTGTTATATGTTGGAGATCTTTCTTATTCTGATGAACATGACTACAAAGATATGGGTTTACGGTGGGATACATGGGGCCGATTTGCTGAAAGGAGTGCAGCATATCAGCCATGGATGTGGAATGTGGGAAACCACGAAGTAGAGTTTTTGCCTGAAGTGGGAGAAGTTGAACCTTTCAAAAACTATCTTTACCGATATACTACTCCCTATTCGGCTTCCAAAAGCACCAGCCCCCTCTGGTATGCAGTCAGGCGTGCCTCTGCTCATATCATTGTGCTATCAAGCTATTCTCCATTTGTGAAGTACACGCCTCAATACATATGGCTTAAAGAAGAGCTGGCGCGGGTTGATAGAAAGAAGACACCTTGGCTCATTGTGCTCGTGCACAAGCCACTCTACAGCAGCAACGTAGCTCACTACATGGAGGGTGAAGCCATGCGATCAGTTTTTGAGACATGGTTCGTCCAATACAAAGTTGATGTCATCTTTGCCGGCCATGTCCATGCTTATGAAAGATCATATCGATACTCCAATATAGACTACAACATAACTGGCGGTAGAAGGTATCCCATACCTGACAAATCAGCACCTATTTACATAACAATCGGAGATGGAGGAAATCTAGAAGGTCTTGCCTCAAGTTATTTGGATCCACAGCCAGAATATTCTGCATTCAGAGAAGCGAGCTATGGACACGCCACACTGGAGATAAAAAACAGGACCCATGCTATCTACCACTGGTATCGCAATGATGACGGAAAGAAAGTCCCAGCTGACTCTCTCGTATTGCATAACCAGTATTGGGGAAGCAATGGAAGAAAACAGAATGAGGTTATTGATGAAGTTGTCAATGTTAAATGA

>Glyma13g23090.2   sequence type=CDS   gene model=Glyma13g23090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTTCAATATTCCAAGGCCATGTTGCTTAATTTAGTTCTTGTTTCCTTTGTCCTCTTGAGTTCTATCAGAGATGGGAGTGCAGGGATCACCAGCTCTTTCGTTCGGCCACAGTGGCCAGGAGTTGACATTCCCGTGGATCATGAAGTATTTGCAGTTCCAAAGGGTTATAATGCACCTCAACAAGTGCACATCACGCAAGGTGACTATGATGGAAAAGCAGTAATAGTCTCATGGGTGACCCCAGATGAACCAGGGACTCGCCATGTGCAATATGGCACATCAAAGGATAAGTTTAAAACTAGTGCAGAAGGCACAGTTGCAAACTACACTTTCTATAACTACAAGTCTGGCTACATTCATCATTGTCTTATTGAAGGCCTTGAGTATAAGACAAAATACTACTATAGAATTGGAAGTGGTGATTCTGCTCGAGACTTTTGGTTCGAAACACCTCCTAAAGTTGGGCCAGATACTCCCTACAAATTTGGGATCATTGGTGATTTGGGGCAAACGTTTAATTCTCTTTCGACCCTTGAGCATTATTTGGAGAGTGGAGGAGAGGCTGTGTTATATGTTGGAGATCTTTCTTATTCTGATGAACATGACTACAAAGATATGGGTTTACGGTGGGATACATGGGGCCGATTTGCTGAAAGGAGTGCAGCATATCAGCCATGGATGTGGAATGTGGGAAACCACGAAGTAGAGTTTTTGCCTGAAGTGGGAGAAGTTGAACCTTTCAAAAACTATCTTTACCGATATACTACTCCCTATTCGGCTTCCAAAAGCACCAGCCCCCTCTGGTATGCAGTCAGGCGTGCCTCTGCTCATATCATTGTGCTATCAAGCTATTCTCCATTTGTGAAGTACACGCCTCAATACATATGGCTTAAAGAAGAGCTGGCGCGGGTTGATAGAAAGAAGACACCTTGGCTCATTGTGCTCGTGCACAAGCCACTCTACAGCAGCAACGTAGCTCACTACATGGAGGGTGAAGCCATGCGATCAGTTTTTGAGACATGGTTCGTCCAATACAAAGTTGATGTCATCTTTGCCGGCCATGTCCATGCTTATGAAAGATCATATCGATACTCCAATATAGACTACAACATAACTGGCGGTAGAAGGTATCCCATACCTGACAAATCAGCACCTATTTACATAACAATCGGAGATGGAGGAAATCTAGAAGGTCTTGCCTCAAGTTATTTGGATCCACAGCCAGAATATTCTGCATTCAGAGAAGCGAGCTATGGACACGCCACACTGGAGATAAAAAACAGGACCCATGCTATCTACCACTGGTATCGCAATGATGACGGAAAGAAAGTCCCAGCTGACTCTCTCGTATTGCATAACCAGTATTGGTAG

Predicted protein sequences of Glyma13g23090

Limit To All Plant Sequences

>Glyma13g23090.1   sequence type=predicted peptide   gene model=Glyma13g23090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFQYSKAMLLNLVLVSFVLLSSIRDGSAGITSSFVRPQWPGVDIPVDHEVFAVPKGYNAPQQVHITQGDYDGKAVIVSWVTPDEPGTRHVQYGTSKDKFKTSAEGTVANYTFYNYKSGYIHHCLIEGLEYKTKYYYRIGSGDSARDFWFETPPKVGPDTPYKFGIIGDLGQTFNSLSTLEHYLESGGEAVLYVGDLSYSDEHDYKDMGLRWDTWGRFAERSAAYQPWMWNVGNHEVEFLPEVGEVEPFKNYLYRYTTPYSASKSTSPLWYAVRRASAHIIVLSSYSPFVKYTPQYIWLKEELARVDRKKTPWLIVLVHKPLYSSNVAHYMEGEAMRSVFETWFVQYKVDVIFAGHVHAYERSYRYSNIDYNITGGRRYPIPDKSAPIYITIGDGGNLEGLASSYLDPQPEYSAFREASYGHATLEIKNRTHAIYHWYRNDDGKKVPADSLVLHNQYWGSNGRKQNEVIDEVVNVK*

>Glyma13g23090.2   sequence type=predicted peptide   gene model=Glyma13g23090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFQYSKAMLLNLVLVSFVLLSSIRDGSAGITSSFVRPQWPGVDIPVDHEVFAVPKGYNAPQQVHITQGDYDGKAVIVSWVTPDEPGTRHVQYGTSKDKFKTSAEGTVANYTFYNYKSGYIHHCLIEGLEYKTKYYYRIGSGDSARDFWFETPPKVGPDTPYKFGIIGDLGQTFNSLSTLEHYLESGGEAVLYVGDLSYSDEHDYKDMGLRWDTWGRFAERSAAYQPWMWNVGNHEVEFLPEVGEVEPFKNYLYRYTTPYSASKSTSPLWYAVRRASAHIIVLSSYSPFVKYTPQYIWLKEELARVDRKKTPWLIVLVHKPLYSSNVAHYMEGEAMRSVFETWFVQYKVDVIFAGHVHAYERSYRYSNIDYNITGGRRYPIPDKSAPIYITIGDGGNLEGLASSYLDPQPEYSAFREASYGHATLEIKNRTHAIYHWYRNDDGKKVPADSLVLHNQYW*

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